PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0016s0064.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 285aa    MW: 32708.7 Da    PI: 8.9807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0016s0064.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-06111134123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C +C+k+F++ ++L +H+ + H
  Mapoly0016s0064.2.p 111 WQCLYCKKTFRSEDYLDKHMDNrH 134
                          58******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0026111134IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099111134IPR007087Zinc finger, C2H2
PROSITE patternPS000280113134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAILGNDRKR VLPLLLCLVV LALHVIDCSS AILDRRPVYD SRHEDENETQ DGKVHCSRAR  60
SRTASQILDE YLLPFLEKEQ YNLSSACRLN PENNMFKDQE LQKDNVRPSQ WQCLYCKKTF  120
RSEDYLDKHM DNRHYAMLDL NSKRCLADIC GAVHCDHADS VAKATTKKRC NRAAVIKNKH  180
LCEALANECF PSKEGATALR LNEFFLRQFC DSHTCDGSAK HFPRGSGRRK NKSLYMALCL  240
FVIILLGIFY LAVYLYQRDM NGDASSLKRL RQHPILKAQK SKKF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.18e-74C2H2-like zinc finger protein